Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| HNSC | rs17005978 | chr3:19493921 | C/T | 0 | 412 | 16.68 | 14.27 | 0.07 | KM Plot |
| HNSC | rs1703461 | chr6:74344099 | G/A | 2.5E-5 | 410 | 17.13 | 13.1 | 12.73 | KM Plot |
| HNSC | rs1703464 | chr6:74340629 | T/C | 5.81E-5 | 411 | 17.13 | 13.12 | 10.3 | KM Plot |
| HNSC | rs17053428 | chr8:25205663 | A/T | 0 | 412 | 0.07 | 14.6 | 16.43 | KM Plot |
| HNSC | rs17058810 | chr18:73784174 | C/G | 3.03E-5 | 412 | 17.23 | 13.83 | 4.2 | KM Plot |
| HNSC | rs17112444 | chr10:101749974 | A/G | 6.14E-8 | 412 | 3 | 15.4 | 16.37 | KM Plot |
| HNSC | rs17127243 | chr8:18668828 | A/C | 4.62E-8 | 412 | 3 | 15.97 | 16.47 | KM Plot |
| HNSC | rs17194199 | chr2:218312376 | A/G | 4.82E-5 | 406 | 16.08 | 19.17 | 10.57 | KM Plot |
| HNSC | rs17359906 | chr1:173836194 | G/A | 2.18E-6 | 410 | 16.87 | 14.65 | 3.73 | KM Plot |
| HNSC | rs17406901 | chr1:161726019 | T/C | 6.96E-5 | 405 | 16.17 | 16.43 | 4.3 | KM Plot |
| HNSC | rs17415303 | chr1:161721267 | G/A | 5.89E-5 | 407 | 16.17 | 16.43 | 4.3 | KM Plot |
| HNSC | rs17415408 | chr1:161722805 | T/G | 5.89E-5 | 407 | 16.17 | 16.43 | 4.3 | KM Plot |
| HNSC | rs17415505 | chr1:161727927 | C/T | 6.96E-5 | 405 | 16.17 | 16.43 | 4.3 | KM Plot |
| HNSC | rs176157 | chr22:24503987 | C/T | 1.77E-5 | 411 | 16.37 | 15.87 | 10.02 | KM Plot |
| HNSC | rs176158 | chr22:24513337 | T/A | 3.39E-5 | 411 | 16.37 | 15.87 | 10.02 | KM Plot |